diff --git a/scripts/setup.tcl b/scripts/setup.tcl
new file mode 100644
index 0000000..c90e3bb
--- /dev/null
+++ b/scripts/setup.tcl
@@ -0,0 +1,12 @@
+# We must flatten these because the ports are disconnected
+flatten class {-circuit1 dummy_cell_6t}
+flatten class {-circuit1 dummy_cell_1rw_1r}
+flatten class {-circuit1 dummy_cell_1w_1r}
+flatten class {-circuit1 bitcell_array_0}
+flatten class {-circuit1 pbitcell_0}
+flatten class {-circuit1 pbitcell_1}
+property {-circuit1 nshort} remove as ad ps pd
+property {-circuit1 pshort} remove as ad ps pd
+property {-circuit2 nshort} remove as ad ps pd
+property {-circuit2 pshort} remove as ad ps pd
+permute transistors